PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G257300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 270aa    MW: 28301.6 Da    PI: 5.6166
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G257300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06443538
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         C+ +  + ++ fC  ++  lC+ C    H+       H+
  Sevir.1G257300.1.p  4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43
                        7*****************************7677777776 PP

2zf-B_box29.71.4e-0967108338
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                         ++ C+ ++ek+  lfC++++  lC+dC ++ H        Ht
  Sevir.1G257300.1.p  67 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTAseltmrHT 108
                         689*****************************5566777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
CDDcd000212.38E-7347No hitNo description
PfamPF006431.4E-5444IPR000315B-box-type zinc finger
SMARTSM003362.0E-1465112IPR000315B-box-type zinc finger
PROSITE profilePS5011910.11165112IPR000315B-box-type zinc finger
PfamPF006436.5E-866108IPR000315B-box-type zinc finger
CDDcd000215.17E-1068112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP APPSSSGSSA  60
AQQQQPPPLC DICQEKRGLL FCKEDRAILC RDCDVSVHTA SELTMRHTRF LLTGVRLSAE  120
PAACPAPPSE DENSSGSFCC GSAGDAAPPS SAPATSHGSD SSSISEYLTK TLPGWHVEDF  180
LVDEAAAAAN NGVSADASYQ GGLARIGIMP DGYSAWMAQD QLFGDSAAAA GVGRASRERW  240
VPQMMYGGAE LAVAGSKRPR TSSTAYSYW*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953281.10.0PREDICTED: B-box zinc finger protein 20-like
SwissprotQ9LQZ72e-55BBX21_ARATH; B-box zinc finger protein 21
TrEMBLK3YUY50.0K3YUY5_SETIT; Uncharacterized protein
STRINGSi018081m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-37salt tolerance homolog2